General Microscopy Carl Zeiss MicroImaging Online Campus Confocal Laser Scanning Microscopy Principles Confocal Microscopy: Principles and Practice Digital Imaging: Ethics Imaging and Analysis: Instruction The Imaging Gateway (The Scientist and Invitrogen) Modern Research and Educational Topics in Microscopy Molecular Expressions: Exploring the World of Optics and Microscopy* Nikon MicroscopyU* Open Microscopy Environment (OME) SVI-Wiki on 3D Microscopy, Deconvolution, Visualization and Analysis Teaching Modules (EAMNET) Useful Microscopy Links Colocalization Colocalisation (MBF) Colocalization - How does it work? (Zeiss) Colocalization Analysis (MPI-CBG) Colocalization Basics (CoLocalization Research Software) Colocalization of Fluorophores in Confocal Microscopy (Olympus) Quantitative Imaging for Colocalisation Analysis (MPI-CBG) References for Colocalization Analysis (Zeiss) SVI-Wiki: Colocalization* General Fluorescence Bright Ideas for Chemical Biology [ Review | Poster ] Invitrogen - Molecular Probes - Fluorescence Tutorials Nature Reviews Focus on Fluorescence Imaging Excitation/Emission Spectra of Fluorophores Choosing Fluorophore Combinations for Confocal Microscopy (Olympus) Curv-O-Matic 2.0 (Omega Optical) Fluorescence Dye and Filter Database (Zeiss) Fluorescence Spectrum Viewer (BD) Fluorescent Dye Spectra Fluorescent Spectra: An Interactive Exploratory Database Fluorophores.org Molecular Probes - Fluorescence Spectra Viewer (Invitrogen)* Online Spectra Viewer Applet Two-Photon Excitation Cross Sections Image Processing and Analysis Freeware ImageJ* ImageJ Homepage Tutorials and Examples Fiji ImageJ Bundle (more current than MBF bundle) Volume Viewer (plugin for analysis of Z-series stacks) Other Programs BioImageXD CellProfiler CellTracker CombineZP Movie Confocal Assistant Endrov FARSIGHT Toolkit FreeSFP GNU Image Manipulation Program (GIMP) Huygens Suite ImageSurfer ImageTrak IrfanView Microsoft Image Composite Editor MIPAV Neuromantic NIH Image NIS-Elements Viewer [Version 4.0 | Version 3.1] Paint.NET PhotochemCAD PIC-Viewer and WinFluor UTHSCSA ImageTool V3D VisBio Visual3D Volocity Demo Voxx Zeiss AxioVision LE Zeiss LSM Image Browser XCOSM XuvTools Tutorials Hypermedia Image Processing Reference Image Processing Fundamentals Introduction to Confocal Microscopy and Image Analysis (by J. Paul Robinson) Local Microscopy Laboratory for Optical and Computation Instrumentation Microscopy at the University of Wisconsin-Madison UW Medical School Electron Microscope Facility Sample Preparation Histosearch: The Histology Search Engine IHC World Immunostaining Techniques (Millipore) Invitrogen Protocols (Invitrogen) Technical Center (Jackson ImmunoResearch) Vadlo (Biology Search Engine) * = Recommended